Gene : Pavir.Ca00978 P. virgatum

Defline:  (1 of 9) K00026 - malate dehydrogenase (MDH2) Name:  ? Pavir.Ca00978
Secondary Identifier:  ? PAC:30203256

Sequence Feature Displayer

Ontology Annotation Displayer

10 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Pvirgatum PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Panicum virgatum pathologic  
Pvirgatum PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Panicum virgatum pathologic  
Pvirgatum PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Panicum virgatum pathologic  
Pvirgatum PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Panicum virgatum pathologic  
Pvirgatum PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Panicum virgatum pathologic  
Pvirgatum PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Panicum virgatum pathologic  
Pvirgatum GLUCONEO-PWY gluconeogenesis I Panicum virgatum pathologic  
Pvirgatum GLUCONEO-PWY gluconeogenesis I Panicum virgatum pathologic  
Pvirgatum GLYOXYLATE-BYPASS glyoxylate cycle Panicum virgatum pathologic  
Pvirgatum PWY-5690 TCA cycle II (plants and fungi) Panicum virgatum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pavir.Ca00978 5.0kb upstream 5.0kb upstream 14814   true Chr03a: 10741277-10756090 Panicum virgatum
Pavir.Ca00978 5.0kb upstream 5.0kb upstream 5000   false Chr03a: 10751091-10756090 Panicum virgatum
Pavir.Ca00978 5.0kb downstream 5.0kb downstream 14814   true Chr03a: 10736277-10751090 Panicum virgatum
Pavir.Ca00978 5.0kb downstream 5.0kb downstream 5000   false Chr03a: 10736277-10741276 Panicum virgatum

299 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Pavir.Ca00978 P. virgatum GSVIVG01014231001
Pavir.Ca00978 V. vinifera Pavir.J08443
Pavir.Ca00978 V. vinifera Pavir.J12238
Pavir.Ca00978 A. halleri Araha.52017s0001
Pavir.Ca00978 A. halleri Araha.5485s0004
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 C. grandiflora Cagra.1472s0006
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 C. papaya evm.TU.supercontig_131.66
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 R. communis 30150.t000004
Pavir.Ca00978 R. communis 29900.t000052
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 C. sativus Cucsa.273480
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 C. sinensis orange1.1g018314m.g
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 A. thaliana AT3G15020
Pavir.Ca00978 A. thaliana AT1G53240
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238
Pavir.Ca00978 E. salsugineum Thhalv10011552m.g
Pavir.Ca00978 P. virgatum Pavir.J08443
Pavir.Ca00978 P. virgatum Pavir.J12238

26 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   10203.43 OK   High 30.523   High  
  cufflinks   5649.788 OK   High 20.045      
  cufflinks   7512.485 OK   High 27.341   High  
  cufflinks   2561.726 OK   High 8.897   Low  
  cufflinks   4193.765 OK   High 17.439      
  cufflinks   10672.707 OK   High 31.373   High  
  cufflinks   4275.18 OK   High 17.752      
  cufflinks   6822.377 OK   High 23.403   High  
  cufflinks   6958.802 OK   High 25.956   High  
  cufflinks   2713.301 OK   High 10.8      
  cufflinks   2655.387 OK   High 7.635   Low  
  cufflinks   2897.49 OK   High 12.042      
  cufflinks   2690.887 OK   High 9.638   Low  
  cufflinks   3271.261 OK   High 9.584   Low  
  cufflinks   3433.945 OK   High 12.925      
  cufflinks   3382.984 OK   High 13.197      
  cufflinks   1504.747 OK   High 6.016   Low  
  cufflinks   5030.071 OK   High 13.879      
  cufflinks   3542.178 OK   High 14.635      
  cufflinks   6647.838 OK   High 21.867      
  cufflinks   3359.055 OK   High 12.508      
  cufflinks   3241.867 OK   High 13.004      
  cufflinks   3437.377 OK   High 14.515      
  cufflinks   4630.877 OK   High 17.323      
  cufflinks   3056.759 OK   High 11.348      
  cufflinks   6109.965 OK   High 22.267