Gene : Potri.011G096300 P. trichocarpa

Defline:  similar to Malate dehydrogenase; similar to mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH).; [ co-ortholog (1of2) of At1g53240, At3g15020, ] Name:  ? Potri.011G096300
Secondary Identifier:  ? PAC:27002158

Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Ptrichocarpa GLUCONEO-PWY gluconeogenesis I Populus trichocarpa pathologic  
Ptrichocarpa GLUCONEO-PWY gluconeogenesis I Populus trichocarpa pathologic  
Ptrichocarpa PWY66-399 gluconeogenesis III Populus trichocarpa pathologic  
Ptrichocarpa PWY66-399 gluconeogenesis III Populus trichocarpa pathologic  
Ptrichocarpa PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Populus trichocarpa pathologic  
Ptrichocarpa PWY-7115 C4 photosynthetic carbon assimilation cycle, NAD-ME type Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-5464 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Populus trichocarpa pathologic  
Ptrichocarpa PWY-561 superpathway of glyoxylate cycle and fatty acid degradation Populus trichocarpa pathologic  
Ptrichocarpa GLYOXYLATE-BYPASS glyoxylate cycle Populus trichocarpa pathologic  
Ptrichocarpa PWY-5690 TCA cycle II (plants and fungi) Populus trichocarpa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Potri.011G096300 5.0kb upstream 5.0kb upstream 9217   true Chr11: 11734063-11743279 Populus trichocarpa
Potri.011G096300 5.0kb upstream 5.0kb upstream 5000   false Chr11: 11734063-11739062 Populus trichocarpa
Potri.011G096300 5.0kb downstream 5.0kb downstream 9217   true Chr11: 11739063-11748279 Populus trichocarpa
Potri.011G096300 5.0kb downstream 5.0kb downstream 5000   false Chr11: 11743280-11748279 Populus trichocarpa

190 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Potri.011G096300 C. papaya evm.TU.supercontig_131.66
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 A. thaliana AT3G15020
Potri.011G096300 A. thaliana AT1G53240
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 E. salsugineum Thhalv10011552m.g
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 C. clementina Ciclev10008562m.g
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 C. rubella Carubv10009646m.g
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 L. usitatissimum Lus10038323.g
Potri.011G096300 L. usitatissimum Lus10013680.g
Potri.011G096300 L. usitatissimum Lus10017939.g
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 C. subellipsoidea C-169 estExt_Genewise1.C_40150
Potri.011G096300 P. trichocarpa Potri.T143500
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 P. trichocarpa Potri.004G054200
Potri.011G096300 M. pusilla CCMP1545 fgenesh3_kg.11_#_29_#_isotig01016
Potri.011G096300 P. trichocarpa Potri.T143500
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 P. trichocarpa Potri.004G054200
Potri.011G096300 M. sp. RCC299 fgenesh2_kg.C_Chr_08000007
Potri.011G096300 P. trichocarpa Potri.T143500
Potri.011G096300 P. trichocarpa Potri.001G376500
Potri.011G096300 P. trichocarpa Potri.004G054200
Potri.011G096300 P. trichocarpa estExt_fgenesh1_pg.C_Chr_60162
Potri.011G096300 O. lucimarinus Potri.T143500
Potri.011G096300 O. lucimarinus Potri.001G376500

40 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
  cufflinks   3225.198 OK   High 14.38      
  cufflinks   3598.109 OK   High 17.162      
  cufflinks   3508.847 OK   High 19.891   High  
  cufflinks   4167.998 OK   High 19.108   High  
  cufflinks   2127.508 OK   High 12.358      
  cufflinks   2450.943 OK   High 10.929   Low  
  cufflinks   2624.079 OK   High 12.732      
  cufflinks   1386.559 OK     8.828   Low  
  cufflinks   3027.134 OK   High 15.829      
  cufflinks   1718.459 OK   High 11.171   Low  
  cufflinks   3415.305 OK   High 19.448   High  
  cufflinks   1615.737 OK   High 10.176   Low  
  cufflinks   3747.15 OK   High 14.274      
  cufflinks   2427.313 OK   High 13.74      
  cufflinks   2683.148 OK   High 12.18      
  cufflinks   2762.209 OK   High 16.628      
  cufflinks   3751.607 OK   High 19.723   High  
  cufflinks   3559.385 OK   High 18.753   High  
  cufflinks   3200.517 OK   High 15.896      
  cufflinks   2002.733 OK   High 12.712      
  cufflinks   4119.687 OK   High 20.732   High  
  cufflinks   2317.935 OK   High 14.739      
  cufflinks   2899.914 OK   High 17.007      
  cufflinks   3059.678 OK   High 16.728      
  cufflinks     OK   High 31.059      
  cufflinks     OK     24.664      
  cufflinks     OK   High 31.383      
  cufflinks     OK   High 31.472      
  cufflinks     OK   High 51.409   High  
  cufflinks     OK     24.659