Gene : Cucsa.319790 C. sativus v1.0
Defline:  (1 of 3) PF07727//PF14223 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_2) // gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  49
Name:  ? Cucsa.319790 Secondary Identifier:  ? PAC:16977293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cucsa.319790 0.5kb upstream 0.5kb upstream 4895 true scaffold03078: 469776-474670 Cucumis sativus
Cucsa.319790 0.5kb upstream 0.5kb upstream 500 false scaffold03078: 474171-474670 Cucumis sativus
Cucsa.319790 0.5kb downstream 0.5kb downstream 4895 true scaffold03078: 469276-474170 Cucumis sativus
Cucsa.319790 0.5kb downstream 0.5kb downstream 500 false scaffold03078: 469276-469775 Cucumis sativus
Cucsa.319790 1.0kb upstream 1.0kb upstream 5395 true scaffold03078: 469776-475170 Cucumis sativus
Cucsa.319790 1.0kb upstream 1.0kb upstream 1000 false scaffold03078: 474171-475170 Cucumis sativus
Cucsa.319790 1.0kb downstream 1.0kb downstream 5395 true scaffold03078: 468776-474170 Cucumis sativus
Cucsa.319790 1.0kb downstream 1.0kb downstream 1000 false scaffold03078: 468776-469775 Cucumis sativus
Cucsa.319790 2.0kb upstream 2.0kb upstream 6395 true scaffold03078: 469776-476170 Cucumis sativus
Cucsa.319790 2.0kb upstream 2.0kb upstream 2000 false scaffold03078: 474171-476170 Cucumis sativus
Cucsa.319790 2.0kb downstream 2.0kb downstream 6395 true scaffold03078: 467776-474170 Cucumis sativus
Cucsa.319790 2.0kb downstream 2.0kb downstream 2000 false scaffold03078: 467776-469775 Cucumis sativus
Cucsa.319790 5.0kb upstream 5.0kb upstream 9395 true scaffold03078: 469776-479170 Cucumis sativus
Cucsa.319790 5.0kb upstream 5.0kb upstream 5000 false scaffold03078: 474171-479170 Cucumis sativus
Cucsa.319790 5.0kb downstream 5.0kb downstream 9395 true scaffold03078: 464776-474170 Cucumis sativus
Cucsa.319790 5.0kb downstream 5.0kb downstream 5000 false scaffold03078: 464776-469775 Cucumis sativus
Cucsa.319790 10.0kb upstream 10.0kb upstream 14395 true scaffold03078: 469776-484170 Cucumis sativus
Cucsa.319790 10.0kb upstream 10.0kb upstream 10000 false scaffold03078: 474171-484170 Cucumis sativus
Cucsa.319790 10.0kb downstream 10.0kb downstream 14395 true scaffold03078: 459776-474170 Cucumis sativus
Cucsa.319790 10.0kb downstream 10.0kb downstream 10000 false scaffold03078: 459776-469775 Cucumis sativus

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121605386 5273 Angiosperm Singleton cluster - no MSA
122235651 5265 Fabidae Singleton cluster - no MSA
123981865 5270 Rosid Singleton cluster - no MSA
123557540 5271 Pentapetalae Singleton cluster - no MSA
122592354 5272 Eudicot Singleton cluster - no MSA
120877676 5274 Embryophyte Singleton cluster - no MSA
122918565 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain