Gene : Cre05.g233800 C. reinhardtii

Defline:  (1 of 1) K01880 - glycyl-tRNA synthetase (GARS, glyS1) Name:  ? Cre05.g233800
Secondary Identifier:  ? PAC:30783061

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Pathway name Organism Name Analysis Method Analysis Status
Creinhardtii TRNA-CHARGING-PWY tRNA charging Chlamydomonas reinhardtii pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

4 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cre05.g233800 5.0kb upstream 5.0kb upstream 13742   true chromosome_5: 220219-233960 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb upstream 5.0kb upstream 5000   false chromosome_5: 220219-225218 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb downstream 5.0kb downstream 13742   true chromosome_5: 225219-238960 Chlamydomonas reinhardtii
Cre05.g233800 5.0kb downstream 5.0kb downstream 5000   false chromosome_5: 233961-238960 Chlamydomonas reinhardtii

165 Homologs


Gene . Primary Identifier

Ortholog _ Organism . Short Name

Ortholog _ Gene . Primary Identifier
Cre05.g233800 C. papaya evm.TU.supercontig_13.179
Cre05.g233800 R. communis 30128.t000021
Cre05.g233800 V. vinifera GSVIVG01001092001
Cre05.g233800 V. vinifera GSVIVG01008654001
Cre05.g233800 A. thaliana AT1G29880
Cre05.g233800 E. salsugineum Thhalv10006931m.g
Cre05.g233800 C. clementina Ciclev10004524m.g
Cre05.g233800 C. rubella Carubv10013104m.g
Cre05.g233800 C. rubella Carubv10008480m.g
Cre05.g233800 C. rubella Carubv10004365m.g
Cre05.g233800 L. usitatissimum Lus10042096.g
Cre05.g233800 L. usitatissimum Lus10029203.g
Cre05.g233800 L. usitatissimum Lus10008792.g
Cre05.g233800 P. trichocarpa Potri.001G067800
Cre05.g233800 P. trichocarpa Potri.003G162300
Cre05.g233800 G. raimondii Gorai.012G125800
Cre05.g233800 F. vesca gene23028-v1.0-hybrid
Cre05.g233800 C. subellipsoidea C-169 estExt_fgenesh1_pm.C_170008
Cre05.g233800 M. pusilla CCMP1545 MicpuC2.EuGene.0000040604
Cre05.g233800 M. sp. RCC299 e_gw2.02.98.1
Cre05.g233800 T. cacao Thecc1EG014767
Cre05.g233800 T. cacao Thecc1EG008329
Cre05.g233800 M. guttatus Migut.I00670
Cre05.g233800 M. guttatus Migut.D01180
Cre05.g233800 A. halleri Araha.29337s0003
Cre05.g233800 A. halleri Araha.2687s0006
Cre05.g233800 A. halleri Araha.37234s0002
Cre05.g233800 A. halleri Araha.37234s0003
Cre05.g233800 C. grandiflora Cagra.2374s0023
Cre05.g233800 C. grandiflora Cagra.11658s0001

133 Rna Seq Expressionss

Countvariance Method Conflo Count Status Countdispersionvar Library Expression Level Abundance Confhi Locus Expression Level Countuncertaintyvar
38490.2 cufflinks 8.47922 490.287 OK 38490.2 High 42.4608 76.4423 Low 0.0
5806510.0 cufflinks 1.50043 4911.95 OK 5806510.0 High 79.5802 157.66 High 0.0
1278690.0 cufflinks 0.0 2051.5 OK 1278690.0 High 101.909 214.255 High 0.0
5355080.0 cufflinks 1.54182 4726.53 OK 5355080.0 High 74.1186 146.695   0.0
92573.3 cufflinks 0.0 579.076 OK 92573.3 High 27.7935 57.0001 Low 0.0
5022340.0 cufflinks 0.0 4266.37 OK 5022340.0 High 56.2854 115.417   0.0
2738860.0 cufflinks 2.39059 3456.55 OK 2738860.0 High 56.3446 110.299   0.0
1414220.0 cufflinks 4.58815 2510.47 OK 1414220.0 High 87.2278 169.867 High 0.0
1391930.0 cufflinks 4.62507 2492.11 OK 1391930.0 High 86.9836 169.342 High 0.0
439901.0 cufflinks 0.0 1219.44 OK 439901.0 High 56.733 118.447   0.0
1363040.0 cufflinks 2.86102 2514.41 OK 1363040.0 High 40.0933 77.3256 Low 0.0
5501090.0 cufflinks 0.0 4462.24 OK 5501090.0 High 59.0998 121.228   0.0
3640430.0 cufflinks 52.9693 8437.75 OK 3640430.0 High 96.7036 140.438   0.0
185280.0 cufflinks 15.5694 1023.67 OK 185280.0 High 97.9045 180.24   0.0
164391.0 cufflinks 15.3593 968.223 OK 164391.0 High 94.5295 173.7   0.0
1086950.0 cufflinks 0.0 1894.9 OK 1086950.0 High 96.1465 201.945 High 0.0
159539.0 cufflinks 15.3158 954.819 OK 159539.0 High 93.7593 172.203   0.0
254704.0 cufflinks 0.0 937.734 OK 254704.0 High 44.0531 91.4712   0.0
128056.0 cufflinks 13.8471 861.715 OK 128056.0 High 81.7193 149.592   0.0
5797980.0 cufflinks 0.0 4579.7 OK 5797980.0 High 59.8671 122.821   0.0
1535040.0 cufflinks 2.81323 2653.85 OK 1535040.0 High 42.4392 82.0651 Low 0.0
211756.0 cufflinks 15.4567 1089.46 OK 211756.0 High 99.5702 183.684   0.0
193920.0 cufflinks 16.4777 1045.65 OK 193920.0 High 104.472 192.466 High 0.0
1033930.0 cufflinks 4.80015 2172.01 OK 1033930.0 High 75.3518 145.904 High 0.0
110253.0 cufflinks 0.0 629.239 OK 110253.0 High 29.9152 61.4871   0.0
2540000.0 cufflinks 2.59241 3339.1 OK 2540000.0 High 57.0904 111.588   0.0
2458640.0 cufflinks 2.50531 3289.65 OK 2458640.0 High 53.6431 104.781   0.0
38902.4 cufflinks 8.6004 492.729 OK 38902.4 High 43.1292 77.658 Low 0.0
99835.8 cufflinks 0.0 600.241 OK 99835.8 High 31.0043 63.6458   0.0
38935.0 cufflinks 8.53239 492.922 OK 38935.0 High 42.7929 77.0535 Low 0.0