Gene : Glyma.05G189100 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR21297 - DNA-DIRECTED RNA POLYMERASE II Genomic Order:  1891
Name:  ? Glyma.05G189100 Secondary Identifier:  ? PAC:30526427
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.05G189100 0.5kb upstream 0.5kb upstream 3747 true Chr05: 37493208-37496954 Glycine max
Glyma.05G189100 0.5kb upstream 0.5kb upstream 500 false Chr05: 37496455-37496954 Glycine max
Glyma.05G189100 0.5kb downstream 0.5kb downstream 3747 true Chr05: 37492708-37496454 Glycine max
Glyma.05G189100 0.5kb downstream 0.5kb downstream 500 false Chr05: 37492708-37493207 Glycine max
Glyma.05G189100 1.0kb upstream 1.0kb upstream 4247 true Chr05: 37493208-37497454 Glycine max
Glyma.05G189100 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37496455-37497454 Glycine max
Glyma.05G189100 1.0kb downstream 1.0kb downstream 4247 true Chr05: 37492208-37496454 Glycine max
Glyma.05G189100 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37492208-37493207 Glycine max
Glyma.05G189100 2.0kb upstream 2.0kb upstream 5247 true Chr05: 37493208-37498454 Glycine max
Glyma.05G189100 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37496455-37498454 Glycine max
Glyma.05G189100 2.0kb downstream 2.0kb downstream 5247 true Chr05: 37491208-37496454 Glycine max
Glyma.05G189100 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37491208-37493207 Glycine max
Glyma.05G189100 5.0kb upstream 5.0kb upstream 8247 true Chr05: 37493208-37501454 Glycine max
Glyma.05G189100 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37496455-37501454 Glycine max
Glyma.05G189100 5.0kb downstream 5.0kb downstream 8247 true Chr05: 37488208-37496454 Glycine max
Glyma.05G189100 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37488208-37493207 Glycine max
Glyma.05G189100 10.0kb upstream 10.0kb upstream 13247 true Chr05: 37493208-37506454 Glycine max
Glyma.05G189100 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37496455-37506454 Glycine max
Glyma.05G189100 10.0kb downstream 10.0kb downstream 13247 true Chr05: 37483208-37496454 Glycine max
Glyma.05G189100 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37483208-37493207 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315477 5265 Fabidae View MSA
124060840 5270 Rosid View MSA
123744062 5271 Pentapetalae View MSA
122792383 5272 Eudicot View MSA
122048092 5273 Angiosperm View MSA
123429036 5275 Viridiplantae View MSA
121349369 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.402 0.0 79.5022 High Low
cufflinks 39.2267 0.0 104.88 High High
cufflinks 29.5199 0.0 79.6971 High Low
cufflinks 34.2056 0.0 91.8312 High  
cufflinks 32.938 0.0 88.5476 High  
cufflinks 35.3923 0.0 94.9056 High  
cufflinks 37.1414 0.0 99.5526 High  
cufflinks 28.2763 0.0 76.5111 High Low
cufflinks 35.2912 0.0 94.6112 High  
cufflinks 6.764        
cufflinks 4.523       Low
cufflinks 6.697        
cufflinks 8.883     High  
cufflinks 10.221     High  
cufflinks 5.64     High  
cufflinks 9.944     High  
cufflinks 3.556       Low
cufflinks 7.792     High  
cufflinks 7.648     High  
cufflinks 10.942     High High
cufflinks 4.394       Low
cufflinks 10.264     High High
cufflinks 9.68     High  
cufflinks 4.405       Low
cufflinks 11.179     High High
cufflinks 5.14        

0 Strain