Gene : PAC A. thaliana TAIR10
Primary Identifier:  ? AT2G48120 Defline:  pale cress protein (PAC)
Genomic Order:  4240 Name:  ? AT2G48120
Secondary Identifier:  ? PAC:19642155
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G48120 0.5kb upstream 0.5kb upstream 2317 true Chr2: 19679230-19681546 Arabidopsis thaliana
AT2G48120 0.5kb upstream 0.5kb upstream 500 false Chr2: 19679230-19679729 Arabidopsis thaliana
AT2G48120 0.5kb downstream 0.5kb downstream 2317 true Chr2: 19679730-19682046 Arabidopsis thaliana
AT2G48120 0.5kb downstream 0.5kb downstream 500 false Chr2: 19681547-19682046 Arabidopsis thaliana
AT2G48120 1.0kb upstream 1.0kb upstream 2817 true Chr2: 19678730-19681546 Arabidopsis thaliana
AT2G48120 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19678730-19679729 Arabidopsis thaliana
AT2G48120 1.0kb downstream 1.0kb downstream 2817 true Chr2: 19679730-19682546 Arabidopsis thaliana
AT2G48120 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19681547-19682546 Arabidopsis thaliana
AT2G48120 2.0kb upstream 2.0kb upstream 3817 true Chr2: 19677730-19681546 Arabidopsis thaliana
AT2G48120 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19677730-19679729 Arabidopsis thaliana
AT2G48120 2.0kb downstream 2.0kb downstream 3817 true Chr2: 19679730-19683546 Arabidopsis thaliana
AT2G48120 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19681547-19683546 Arabidopsis thaliana
AT2G48120 5.0kb upstream 5.0kb upstream 6817 true Chr2: 19674730-19681546 Arabidopsis thaliana
AT2G48120 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19674730-19679729 Arabidopsis thaliana
AT2G48120 5.0kb downstream 5.0kb downstream 6817 true Chr2: 19679730-19686546 Arabidopsis thaliana
AT2G48120 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19681547-19686546 Arabidopsis thaliana
AT2G48120 10.0kb upstream 10.0kb upstream 11817 true Chr2: 19669730-19681546 Arabidopsis thaliana
AT2G48120 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19669730-19679729 Arabidopsis thaliana
AT2G48120 10.0kb downstream 10.0kb downstream 11817 true Chr2: 19679730-19691546 Arabidopsis thaliana
AT2G48120 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19681547-19691546 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363773 5261 Brassicaceae View MSA
123832407 5264 Brassicales-Malvales View MSA
124338110 5266 SBM View MSA
124240071 5268 Malvidae View MSA
124064228 5270 Rosid View MSA
123739203 5271 Pentapetalae View MSA
122787252 5272 Eudicot View MSA
122044872 5273 Angiosperm View MSA
121348914 5274 Embryophyte View MSA
123381076 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.243        
cufflinks 4.093        
cufflinks 9.748       High
cufflinks 3.818        
cufflinks 7.961        
cufflinks 2.752       Low

0 Strain