restriction_filter Data Restiction [2,1] restricted list < phytozome__transcript__main restricted organism_id Organism ID [586,790,791,472,459,291,727,728,449,321,783,784,322,264,765,384,447,167,530,498,548,782,679,278,502,720,337,343,364,379,336,369,356,333,381,359,372,355,349,549,362,353,331,361,378,460,537,346,328,344,515,374,380,357,363,352,334,365,345,376,367,354,370,329,348,358,338,366,339,375,351,342,330,368,347,377,350,373,335,326,360,340,371,341,332,327,283,314,556,693,463,577,813,316,721,490,710,446,277,711,712,709,715,708,714,795,481,805,810,803,802,811,809,806,807,808,804,801,812,266,474,113,562,561,588,573,673,733,729,732,731,470,539,538,676,706,705,690,392,707,281,461,492,531,182,154,484,585,227,453,835,834,858,859,507,488,122,861,388,482,504,550,723,489,582,325,788,789,560,487,828,827,297,483,173,501,677,701,675,678,510,724,275,508,880,509,526,529,570,698,695,697,569,568,458,527,578,524,221,525,494,702,462,589,768,769,485,475,587,382,699,309,467,718,719,478,689,200,767,766,571,476,567,477,491,305,520,671,320,285,228,229,506,553,505,551,256,800,797,836,822,860,497,304,471,583,825,826,566,451,386,499,323,231,496,591,308,495,590,450,516,772,773,774,775,776,777,778,779,672,680,581,580,703,563,696,670,534,442,318,565,445,688,717,716,532,210,444,533,456,692,298,687,119,473,840,841,771,518,289,519,780,574,91,312,311,500,726,480,584,390,514,691,796,448,686,564,734,735,736,737,738,739,740,741,742,743,744,745,746,747,748,749,750,751,752,753,754,755,756,757,758,759,760,761,762,763,764,552,468,694,781,454,730,310,522,521,575,290,486,233,523,503,770,479,572,385,725,296,669,700,824,545,544,541,558,543,559,469,540,457,317,839,838,837,681,682,683,443,513,684,512,685,493,833,324,668] org_filter drop_down_basic_filter = phytozome__gene__main organism_id region_name Region Name [] filters list = phytozome__gene__main chr_name region_start Region Start [] filters text >=,>,= phytozome__gene__main gene_chrom_start region_end Region End [] filters text <=,=,< phytozome__gene__main gene_chrom_end protein_has_pfam_bool PFAM [] filters boolean_list only,excluded phytozome__transcript__main has_pfam_bool protein_has_panther_bool Panther [] filters boolean_list only,excluded phytozome__transcript__main has_panther_bool protein_has_go_bool GO [] filters boolean_list only,excluded phytozome__transcript__main has_go_bool protein_has_interpro_bool InterPro [] filters boolean_list only,excluded phytozome__transcript__main has_interpro_bool protein_has_enzyme_bool ENZYME [] filters boolean_list only,excluded phytozome__transcript__main has_enzyme_bool protein_has_pathway_bool Pathway [] filters boolean_list only,excluded phytozome__transcript__main has_pathway_bool protein_has_kog_bool KOG [] filters boolean_list only,excluded phytozome__transcript__main has_kog_bool protein_has_kegg_bool KEGG [] filters boolean_list only,excluded phytozome__transcript__main has_kegg_bool protein_has_ssf_bool SSF [] filters boolean_list only,excluded phytozome__transcript__main has_ssf_bool protein_has_smart_bool SMART [] filters boolean_list only,excluded phytozome__transcript__main has_smart_bool protein_has_gene3d_bool Gene3D [] filters boolean_list only,excluded phytozome__transcript__main has_gene3d_bool protein_has_prodom_bool PRODOM [] filters boolean_list only,excluded phytozome__transcript__main has_prodom_bool protein_has_profile_bool PROFILE [] filters boolean_list only,excluded phytozome__transcript__main has_profile_bool protein_has_uniprot_bool UniProt [] filters boolean_list only,excluded phytozome__transcript__main has_uniprot_bool gene_name_filter Gene Name(s) [] filters id_list =,in phytozome__gene__main gene_name transcript_name_filter Transcript Name(s) [] filters id_list =,in phytozome__transcript__main transcript_name peptide_name_filter Peptide Name(s) [] filters id_list =,in phytozome__transcript__main peptide_name pac_transcript_id PAC Transcript ID [] filters id_list =,in phytozome__transcript__main transcript_id_key pac_gene_id PAC Gene ID [] filters id_list =,in phytozome__gene__main gene_id_key synonym_id Synonyms [] filters id_list =,in phytozome__synonyms__dm id 5_utr 5' UTR [] filters boolean_list only,excluded phytozome__gene__main has_5_utr_bool 3_utr 3' UTR [] filters boolean_list only,excluded phytozome__gene__main has_3_utr_bool longest Primary Transcript [,excluded] filters boolean only,excluded phytozome__transcript__main longest protein_has_pfam PFAM_bool [] filters boolean_list only,excluded phytozome__transcript__main has_pfam_bool protein_has_panther Panther_bool [] filters boolean_list only,excluded phytozome__transcript__main has_panther_bool protein_has_go GO_bool [] filters boolean_list only,excluded phytozome__transcript__main has_go_bool protein_has_interpro InterPro_bool [] filters boolean_list only,excluded phytozome__transcript__main has_interpro_bool protein_has_enzyme ENZYME_bool [] filters boolean_list only,excluded phytozome__transcript__main has_enzyme_bool protein_has_pathway Pathway_bool [] filters boolean_list only,excluded phytozome__transcript__main has_pathway_bool protein_has_kog KOG_bool [] filters boolean_list only,excluded phytozome__transcript__main has_kog_bool protein_has_kegg KEGG_bool [] filters boolean_list only,excluded phytozome__transcript__main has_kegg_bool protein_has_ssf SSF_bool [] filters boolean_list only,excluded phytozome__transcript__main has_ssf_bool protein_has_smart SMART_bool [] filters boolean_list only,excluded phytozome__transcript__main has_smart_bool protein_has_gene3d Gene3D_bool [] filters boolean_list only,excluded phytozome__transcript__main has_gene3d_bool protein_has_prodom PRODOM_bool [] filters boolean_list only,excluded phytozome__transcript__main has_prodom_bool protein_has_profile PROFILE_bool [] filters boolean_list only,excluded phytozome__transcript__main has_profile_bool protein_has_uniprot UniProt_bool [] filters boolean_list only,excluded phytozome__transcript__main has_uniprot_bool pfam_id_list PFAM ID(s) [] filters text =,in phytozome__pfam__dm id panther_id_list Panther ID(s) [] filters text =,in phytozome__panther__dm id go_id_list GO ID(s) [] filters text =,in phytozome__go__dm id interpro_id_list InterPro ID(s) [] filters text =,in phytozome__interpro__dm id enzyme_id_list ENZYME ID(s) [] filters text =,in phytozome__enzyme__dm id pathway_id_list Pathway ID(s) [] filters text =,in phytozome__pathway__dm id kog_id_list KOG ID(s) [] filters text =,in phytozome__kog__dm id kegg_id_list KEGG ID(s) [] filters text =,in phytozome__kegg__dm id ssf_id_list SSF ID(s) [] filters text =,in phytozome__ssf__dm id smart_id_list SMART ID(s) [] filters text =,in phytozome__smart__dm id gene3d_id_list Gene3D ID(s) [] filters text =,in phytozome__gene3d__dm id prodom_id_list PRODOM ID(s) [] filters text =,in phytozome__prodom__dm id profile_id_list PROFILE ID(s) [] filters text =,in phytozome__profile__dm id uniprot_id_list UniProt ID(s) [] filters text =,in phytozome__uniprot__dm id expression_class Restrict to these expression classes [Expressed,NotExpressed,HighGene,LowGene,HighLibrary,LowLibrary] filters list = phytozome__expression__dm expression_class expression_sample_group Restrict to these sample groups [Athaliana_Araport11 GeneAtlas v2,Athaliana_Araport11 GeneAtlas v2 TPM,Athaliana_TAIR10 GeneAtlas v1 Tissue Sample,Athaliana_TAIR10 GeneAtlas v2,Athaliana_TAIR10 GeneAtlas v2 TPM,Ahypogaea_v1.0 Tissue Sample,Ahypogaea_v1.0 Tissue Sample Individual Replicates,Bdistachyon_v3.1 GeneAtlas v1 Tissue Sample,Bdistachyon_v3.1 GeneAtlas v2,Bdistachyon_v3.1 GeneAtlas v2 TPM,Creinhardtii_CC-4532_v6.1 Anaerobiosis,Creinhardtii_CC-4532_v6.1 Bilin Signaling,Creinhardtii_CC-4532_v6.1 Cu Deficiency Photoautotrophic,Creinhardtii_CC-4532_v6.1 Fe Deficiency,Creinhardtii_CC-4532_v6.1 GeneAtlas v2,Creinhardtii_CC-4532_v6.1 GeneAtlas v2 TPM,Creinhardtii_CC-4532_v6.1 H2O2 Treatment,Creinhardtii_CC-4532_v6.1 N Concentration,Creinhardtii_v5.6 Anaerobiosis,Creinhardtii_v5.6 Bilin Signaling,Creinhardtii_v5.6 Cu Deficiency Photoautotrophic,Creinhardtii_v5.6 Fe Deficiency,Creinhardtii_v5.6 GeneAtlas v1,Creinhardtii_v5.6 GeneAtlas v2,Creinhardtii_v5.6 GeneAtlas v2 TPM,Creinhardtii_v5.6 H2O2 Treatment,Creinhardtii_v5.6 N Concentration,Egrandis_v2.0 GeneAtlas v2,Egrandis_v2.0 GeneAtlas v2 TPM,Egrandis_v2.0 Tissue Sample,Gmax_Wm82.a2.v1 GeneAtlas v1 Tissue Sample,Gmax_Wm82.a2.v1 Tissue Sample,Gmax_Wm82.a4.v1 GeneAtlas v2,Gmax_Wm82.a4.v1 GeneAtlas v2 TPM,Kfedtschenkoi_v1.1 GeneAtlas v2,Kfedtschenkoi_v1.1 GeneAtlas v2 TPM,Lalbus_v1 GeneAtlas v2,Lalbus_v1 GeneAtlas v2 TPM,Mtruncatula_Mt4.0v1 GeneAtlas v1 Tissue Sample,Mtruncatula_Mt4.0v1 GeneAtlas v2,Mtruncatula_Mt4.0v1 GeneAtlas v2 TPM,PhalliiHAL_v2.1 GeneAtlas v2,PhalliiHAL_v2.1 GeneAtlas v2 TPM,Phallii_v2.0 GeneAtlas v1 Tissue Sample,Phallii_v3.1 GeneAtlas v1 Tissue Sample,Phallii_v3.1 GeneAtlas v2,Phallii_v3.1 GeneAtlas v2 TPM,Pvirgatum_v4.1 GeneAtlas v1 Tissue Sample,Pvirgatum_v5.1 GeneAtlas v1 Tissue Sample,Pvirgatum_v5.1 GeneAtlas v2,Pvirgatum_v5.1 GeneAtlas v2 TPM,Pvulgaris_v2.1 Tissue Sample,Ppatens_v3.3 GeneAtlas v1 Tissue Sample,Ppatens v3.3 GeneAtlas v2 TPM,Ppatens_v3.3 GeneAtlas v2,Ptrichocarpa_v3.0 GeneAtlas v1 Tissue Sample,Ptrichocarpa_v3.0 tremula x alba Tissue Samples,Ptrichocarpa_v3.1 GeneAtlas v1 Tissue Sample,Ptrichocarpa_v4.1 GeneAtlas v2,Ptrichocarpa_v4.1 GeneAtlas v2 TPM,Sitalica_v2.2 GeneAtlas v1 Tissue Sample,Sitalica_v2.2 GeneAtlas v2,Sitalica_v2.2 GeneAtlas v2 TPM,Sviridis_v1.1 GeneAtlas v1 Tissue Sample,Sviridis_v2.1 GeneAtlas v1 Tissue Sample,Sviridis_v2.1 GeneAtlas v2,Sviridis_v2.1 GeneAtlas v2 TPM,SbicolorRio_v2.1 GeneAtlas v2,SbicolorRio_v2.1 GeneAtlas v2 TPM,Sbicolor_v3.1.1 EPICON Leaf,Sbicolor_v3.1.1 EPICON Root,Sbicolor_v3.1.1 GeneAtlas v1 Tissue Sample,Sbicolor_v3.1.1 GeneAtlas v2,Sbicolor_v3.1.1 GeneAtlas v2 TPM,Sfallax_v1.1 GeneAtlas v2,Sfallax_v1.1 GeneAtlas v2 TPM,Vunguiculata_v1.1 Tissue Sample] filters list =,in phytozome__expression__dm sample_group coexpression_organism_sample_group Restrict to these sample groups [Athaliana_Araport11 GeneAtlas v2,Athaliana_Araport11 GeneAtlas v2 TPM,Athaliana_TAIR10 GeneAtlas v1 Tissue Sample,Athaliana_TAIR10 GeneAtlas v2,Athaliana_TAIR10 GeneAtlas v2 TPM,Ahypogaea_v1.0 Tissue Sample,Ahypogaea_v1.0 Tissue Sample Individual Replicates,Bdistachyon_v3.1 GeneAtlas v1 Tissue Sample,Bdistachyon_v3.1 GeneAtlas v2,Bdistachyon_v3.1 GeneAtlas v2 TPM,Creinhardtii_CC-4532_v6.1 Anaerobiosis,Creinhardtii_CC-4532_v6.1 Bilin Signaling,Creinhardtii_CC-4532_v6.1 Cu Deficiency Photoautotrophic,Creinhardtii_CC-4532_v6.1 Fe Deficiency,Creinhardtii_CC-4532_v6.1 GeneAtlas v2,Creinhardtii_CC-4532_v6.1 GeneAtlas v2 TPM,Creinhardtii_CC-4532_v6.1 H2O2 Treatment,Creinhardtii_CC-4532_v6.1 N Concentration,Creinhardtii_v5.6 Anaerobiosis,Creinhardtii_v5.6 Bilin Signaling,Creinhardtii_v5.6 Cu Deficiency Photoautotrophic,Creinhardtii_v5.6 Fe Deficiency,Creinhardtii_v5.6 GeneAtlas v1,Creinhardtii_v5.6 GeneAtlas v2,Creinhardtii_v5.6 GeneAtlas v2 TPM,Creinhardtii_v5.6 H2O2 Treatment,Creinhardtii_v5.6 N Concentration,Egrandis_v2.0 GeneAtlas v2,Egrandis_v2.0 GeneAtlas v2 TPM,Egrandis_v2.0 Tissue Sample,Gmax_Wm82.a2.v1 GeneAtlas v1 Tissue Sample,Gmax_Wm82.a2.v1 Tissue Sample,Gmax_Wm82.a4.v1 GeneAtlas v2,Gmax_Wm82.a4.v1 GeneAtlas v2 TPM,Kfedtschenkoi_v1.1 GeneAtlas v2,Kfedtschenkoi_v1.1 GeneAtlas v2 TPM,Lalbus_v1 GeneAtlas v2,Lalbus_v1 GeneAtlas v2 TPM,Mtruncatula_Mt4.0v1 GeneAtlas v1 Tissue Sample,Mtruncatula_Mt4.0v1 GeneAtlas v2,Mtruncatula_Mt4.0v1 GeneAtlas v2 TPM,PhalliiHAL_v2.1 GeneAtlas v2,PhalliiHAL_v2.1 GeneAtlas v2 TPM,Phallii_v2.0 GeneAtlas v1 Tissue Sample,Phallii_v3.1 GeneAtlas v1 Tissue Sample,Phallii_v3.1 GeneAtlas v2,Phallii_v3.1 GeneAtlas v2 TPM,Pvirgatum_v4.1 GeneAtlas v1 Tissue Sample,Pvirgatum_v5.1 GeneAtlas v1 Tissue Sample,Pvirgatum_v5.1 GeneAtlas v2,Pvirgatum_v5.1 GeneAtlas v2 TPM,Pvulgaris_v2.1 Tissue Sample,Ppatens_v3.3 GeneAtlas v1 Tissue Sample,Ppatens v3.3 GeneAtlas v2 TPM,Ppatens_v3.3 GeneAtlas v2,Ptrichocarpa_v3.0 GeneAtlas v1 Tissue Sample,Ptrichocarpa_v3.0 tremula x alba Tissue Samples,Ptrichocarpa_v3.1 GeneAtlas v1 Tissue Sample,Ptrichocarpa_v4.1 GeneAtlas v2,Ptrichocarpa_v4.1 GeneAtlas v2 TPM,Sitalica_v2.2 GeneAtlas v1 Tissue Sample,Sitalica_v2.2 GeneAtlas v2,Sitalica_v2.2 GeneAtlas v2 TPM,Sviridis_v1.1 GeneAtlas v1 Tissue Sample,Sviridis_v2.1 GeneAtlas v1 Tissue Sample,Sviridis_v2.1 GeneAtlas v2,Sviridis_v2.1 GeneAtlas v2 TPM,SbicolorRio_v2.1 GeneAtlas v2,SbicolorRio_v2.1 GeneAtlas v2 TPM,Sbicolor_v3.1.1 EPICON Leaf,Sbicolor_v3.1.1 EPICON Root,Sbicolor_v3.1.1 GeneAtlas v1 Tissue Sample,Sbicolor_v3.1.1 GeneAtlas v2,Sbicolor_v3.1.1 GeneAtlas v2 TPM,Sfallax_v1.1 GeneAtlas v2,Sfallax_v1.1 GeneAtlas v2 TPM,Vunguiculata_v1.1 Tissue Sample] filters list =,in phytozome__coexpression__dm organism_sample_group coexpressed_gene_name_filter Coexpressed Gene Name(s) [] filters id_list =,in phytozome__coexpression__dm coexpressed_gene_name coexpressed_gene_id_filter Coexpressed Gene ID(s) [] filters id_list =,in phytozome__coexpression__dm coexpressed_gene_id